/logo.png

Extend or continue a GROMACS simulation

Extend your GROMACS simulation by learning how to continue or restart your simulation run in this article. Understand the necessary setup, tools and techniques to keep your simulation running smoothly.

How to compute the RMSF using GROMACS

A detailed step-by-step guide to compute the Root Mean Square Fluctuation (RMSF) using the gmx rmsf module provided by GROMACS. Learn how to analyze your simulation data and understand how to measure the flexibility of your biomolecules using the RMSF.

How to study Hydrogen bonds using GROMACS

Unlock the secrets of Hydrogen bonding in your biomolecular simulation with GROMACS. In this article, learn about the built-in gmx hbond tool for identifying, analyzing, and understanding Hydrogen bonds in your simulation data with GROMACS.

How to install GROMACS

Get started with Gromacs, the powerful molecular dynamics simulation package, by learning how to install it on your system in this comprehensive tutorial. Get the tips and tricks to installing and configuring Gromacs in MacOS or Linux

GROMACS mdp file parameters

Master the art of creating Gromacs mdp files with this comprehensive guide. Learn about the important mdp file parameters that control the behavior of your Gromacs simulation and understand how to tune them for optimal results

How to create an index file in GROMACS

Streamline your GROMACS workflow by learning how to create an index file in this step-by-step tutorial. Understand the role of index files in GROMACS simulations and gain insights on how to effectively use them for efficient analysis of your data.