An Introduction to Enhanced Sampling and Metadynamics
An Introduction to Enhanced Sampling with a focus on Metadynamics simulations
VMD Selection Tool: How to Select Atoms and Residues in VMD
Learn how to efficiently use the VMD Selection Tool.
Rowan - Next-Generation Quantum Chemistry
Experience quantum chemistry simplified with Rowan – the next-gen platform making molecular visualization accessible. Register now for 500 free credits!
VMD Representations and Color Schemes
Explore drawing methods, color schemes, and atom-specific adjustments in VMD.
Scripting in PyMOL: A Comprehensive Guide for Beginners
Learn how to automate tasks and optimize image generation in PyMOL using pml and Python scripting.
GROMACS Tutorial: Coarse-Grained simulation of a protein membrane system
Using GROMACS to perform Coarse-Grained (CG) simulations of a protein in a membrane environment using the Martini force field
Hydrogen bond Analysis with VMD
A Guide to the Hydrogen Bond extension to analyze hbonds using VMD
A Step-by-Step Guide to RMSD Analysis with VMD
Explore the VMD RMSD Trajectory Tool to compute Root-Mean-Square Deviation (RMSD) for dynamic protein analysis. Step-by-step guide inside.
GROMACS Tutorial: Coarse-Grained Simulations with Martini 3 Force Field
Using GROMACS to perform Coarse Grained simulations of a soluble protein with Martini force field
VMD Measurements: Analyze Distances and Angles with VMD
Use VMD to measure distances and angles, and track their progression in molecular simulations.